José Paulo Sampaio
Associate Professor
Integrated Member
Research Group
Molecular Microbiology
Departamento de Ciências da Vida, Faculdade de Ciências e Tecnolologia, Universidade Nova de Lisboa, 2829-516 Caparica, Portugal
212 948 530
- ext 11102
212 948 530
Research Interests
Evolutionary Biology
Yeast Population Genomics
Microbe Domestication
Main publications
Complete publication list at: http://www.crem.fct.unl.pt/Yeast_Genomics_Lab/yeast_genomics_lab_014.htm

David-Palma M, Libkind D, Sampaio JP. 2014. Global distribution, diversity hotspots and niche transitions of an astaxanthin-producing eukaryotic microbe. Molecular Ecology [Epub ahead of print].

Leducq J-B, Guillaume C, Samani P, Dubé AK, Sylvester K, James B, Almeida P, Sampaio JP, Hittinger CT, Bell G, Landry CR. 2014. Local climatic adaptation in a widespread microorganism.Proceedings of the Royal Society B (in press)

Coelho MA, Gonçalves C, Sampaio JP, Gonçalves P. 2013. Extensive intra-kingdom horizontal gene transfer converging on a fungal fructose transporter gene. PLoS Genet. 9(6): e1003587.

Libkind D, Hittinger CT, Valério E, Gonçalves C, Dover J, Johnston M, Gonçalves P, Sampaio JP. 2011. Microbe domestication and the identification of the wild genetic stock of lager-brewing yeast. Proceedings of the National Academy of Sciences USA 108: 14539-14544.
DOI 10.1073/pnas.1105430108

Gonçalves P, Valério E, Correia C, Almeida JMGCF, Sampaio JP. 2011. Evidence for divergent evolution of growth temperature preference in sympatric Saccharomyces species. PLoS ONE 6 (6): e20739.

Coelho MA, Gonçalves P, Sampaio JP. 2011. Evidence for maintenance of sex determinants but not of sexual stages in red yeasts, a group of early diverged basidiomycetes. BMC Evolutionary Biology 11: 249.
DOI 10.1186/1471-2148-11-249

Hittinger CT, Gonçalves P, Sampaio JP, Dover J, Johnston M, Rokas A. 2010. Remarkably ancient balanced polymorphisms in a multi-locus gene network. Nature 464: 54-58.

Coelho MA, Sampaio JP, Gonçalves P. 2010. A deviation from the bipolar-tetrapolar mating paradigm in an early diverged basidiomycete. PLoS Genetics 6(8): e1001052.

Sampaio JP and Gonçalves P. 2008. Natural populations of Saccharomyces kudriavzevii in Portugal are associated with oak bark and sympatric with S. cerevisiae and S. paradoxus. Applied and Environmental Microbiology 74: 2144-2152.

Libkind D, Ruffini A, van Broock M, Alves L, and Sampaio JP. 2007. Biogeography, host-specificity and molecular phylogeny of the basidiomycetous yeast Phaffia rhodozyma and its sexual state Xanthophyllomyces dendrorhous. Applied and Environmental Microbiology 73: 1120-1125.

Hibbett D, Binder M, Bischoff JF, Blackwell M, Cannon PF, Eriksson OE, Huhndorf S, James TY, Kirk PM, Lucking R, Lumbsch HT, Lutzoni FL, Matheny PB, McLaughlin DJ, Powell MJ, Redhead S, Schoch CL, Spatafora, JW, Stalpers JA, Vilgalys R, Aime MC, Aptroot A, Bauer R, Begerow D, Benny GL, Castlebury LA, Crous PW, Dai Y-C, Gams W, Geiser DM, Griffith GW, Gueidan C, Hawksworth DL, Hestmark G, Hosaka K, Humber RA, Hyde, KD, Ironside JE, Koljag U, Kurtzman CP, Larsson K-H, Lichtwardt R, Longcore J, Miadlikowska J, Miller A, Moncalvo J-M, Mozley-Standridge S, Oberwinkler F, Parmasto E, Reeb V, Rogers JD, Roux C, Ryvarden L, Sampaio JP, Schußler A, Sugiyama J, Thorn RG, Tibell L, Untereiner WA, Walker C, Wang Z, Weir A, Weiss M, White MM, Winka K, Yao Y-J, and Zhang N. 2007. A higher-level phylogenetic classification of the Fungi. Mycological Research 111: 509-547.